PPGBqBM PROGRAMA DE PÓS-GRADUAÇÃO MULTICÊNTRICO EM BIOQUÍMICA E BIOLOGIA MOLECULAR INSTITUTO DE CIÊNCIAS FARMACÊUTICAS Téléphone/Extension: 994293663-
Dissertation/Thèse

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2024
Thèses
1
  • GENILDA CASTRO DE OMENA NETA
  • IN SILICO PREDICTION OF TUMOR ANTIGEN MULTI-EPITOP VACCINE CANDIDATE FOR TESTICULAR CANCER ANTIGEN - TFDP3
     
  • Leader : CARLOS ALBERTO DE CARVALHO FRAGA
  • MEMBRES DE LA BANQUE :
  • AMANDA KARINE BARROS FERREIRA RODRIGUES
  • BRUNA DEL VECHIO KOIKE
  • CARLOS ALBERTO DE CARVALHO FRAGA
  • FRANCIS SOARES GOMES
  • JUSSARA ALMEIDA DE OLIVEIRA BAGGIO
  • Data: 19 févr. 2024


  • Afficher le Résumé
  • Breast cancer. considered the main malignant neoplasm that affects women in the Brazil and in the World. Molecular subtypes are categorized into luminal and non-luminal. Non-luminal tumors have an unfavorable prognosis, high recurrence rate and few treatment possibilities, and those available do not significantly increase patient survival. Therefore, the need to prospect new, more effective and specific treatment strategies for non-luminal subtypes. The objective proposed in this work is the in silico prediction of tumor antigenic multi-epitope vaccine candidates for non-luminal subtypes. The choice of targets for the development of multi-epitope vaccines was performed based on the analysis of 170 RNA expression samples from patients with breast cancer of the invasive ductal carcinoma type and non-luminal subtypes (HER2 and basal) and 80 samples of breast tissue standard available for download in public banks. In these data, the most differentially expressed genes were obtained using the limma package and considering p<0.05 and |logFC| >1 for each subtype. These genes were compared to each other using the Venn diagram. The enriched pathways of genes unique to each subtype were evaluated in KEGG and Reactome. In addition, the protein interaction of the differentially expressed transcripts and the subcellular localization in the cell membrane were evaluated in the Cytoscape 3.9.1 software by STRING plugging. Amino acid sequences of selected target proteins, in canonical FASTA format, were obtained from the UniProt database. Each sequence was evaluated for its tumor antigenicity by the Vaxijen server v.2.0. Then be. The prediction of the linear epitopes of the B lymphocytes, which stimulate the humoral response, was carried out by the ABCpred server. In the epitopes of class I and class II of T lymphocytes, which trigger the cellular response, the analyzes will be performed by the IEDB server. All selected epitopes will be evaluated for antigenicity, allergenicity, immunogenicity and toxicity by servers. They will also be modeled and evaluated for affinity with experimentally validated software alleles. With all epitopes selected be. The estimate of population coverage of MHC class I and II epitopes was performed by the IEDB servers. After being. The prediction of the epitopes that stimulate the production of interferon-gamma cytokines was performed by the IFN epitope software. The construction of the multi-epitope vaccine involved the use of several tools that enabled structural modifications to increase immunogenicity, evaluation of cross-reactivity, evaluation of physicochemical properties, allergenicity, antigenicity and toxicity, prediction of secondary and tertiary structure, refinement and validation, assessment of immunogenicity and receptor binding affinity. Also, be. Optimization of in silico cloning of the multi-epitope vaccine was performed to ensure in vivo expression. At this stage of the study, proteins PPP4C and PAK4 in the Her2 subtype, and ENO1 and SEPHS1 in the Basal subtype, were identified as potential targets for predicting the epitopes that will compose multi-epitope vaccines. These genes present pathways associated with important events in the tumor development process, as well as interaction with other proteins that play a regulatory role. It is expected to find, from all analyzes carried out, promising tumor antigenic multi-epitope vaccine candidates for the immunotherapeutic treatment of non-luminal subtypes.

2
  • STELLA FREITAS DE QUEIROZ
  • PURIFICATION, CHARACTERIZATION AND EVALUATION OF THE ANTIMICROBIAL ACTIVITY OF THERMOSTABLE LECTIN FROM SHELLS OF Abarema cochliacarpos (GOMES 1803) BARNEBY & GRIMES 1996
  • Leader : FRANCIS SOARES GOMES
  • MEMBRES DE LA BANQUE :
  • EDMA CARVALHO DE MIRANDA
  • ENIO JOSE BASSI
  • FRANCIS SOARES GOMES
  • HUGO JUAREZ VIEIRA PEREIRA
  • POLLYANNA MICHELLE DA SILVA
  • Data: 22 mars 2024


  • Afficher le Résumé
  • Several plants are used by man for therapeutic use and propagated over generations. Currently there is a growth in research seeking to identify and isolate active substances present in these organisms in order to identify new drugs. The production of the active principles of these organisms is related to their defense mechanism against external agents. These substances are normally classified into primary and secondary metabolites. Lectins are proteins of primary metabolism that can assume several biological roles, including antibacterial, antifungal, anti-inflammatory, antitumor and healing activities. These activities are related to the ability of lectins to bind to carbohydrates present on the cell surface of target organisms, preventing their development and/or inducing a cellular response. Abarema cochliacarpos (Gomes) Barneby & Grimes, popularly known as barbatimão, is a plant used in folk medicine to treat ulcers, wounds, skin infections, gastritis, among others. This study aims to purify, characterize and evaluate the antimicrobial activity of the bark lectin of A. cochliacarpos. The extract was prepared, filtered over activated charcoal and an aliquot of this filtrate was applied to a chitin chromatographic column. Proteins of interest were eluted with 1M acetic acid. Then, the sample was dialyzed to remove the elution solution and its hemagglutinating activity (512) was evaluated. It was possible to confirm the purification of the lectin, called AcBL (lectin from the bark of A. cochliacarpos), through SDS-PAGE electrophoresis under non-reducing conditions; the gel showed the presence of a protein band representing a molecular mass of 51 kDa. Protein dosage was performed at all stages of purification, as well as characterization tests. AcBL was inhibited by casein, showed thermostability in a wide temperature range, proved to be an acid-neutral protein and had its activity reduced in the presence of EDTA, calcium and magnesium ions. AcBL showed antibacterial activity against A. baumannii, E. faecalis, E. coli, K. pneumoniae, S. enteritidis and S. pyogenes, exhibited antifungal activity against C. neoformans and C. gattii and was able to inhibit the biofilm formed by C. neoformans. In this way, the barbatimão bark lectin can be applied as an alternative in the treatment of diseases caused by pathogenic microorganisms. The development of this work contributes to the isolation of new antimicrobial proteins, with regional relevance when investigating lectins from a medicinal plant in Northeast Brazil, which may represent a new biomaterial with high biotechnological potential.

3
  • JOSIEL SANTOS DO NASCIMENTO
  • PLANT SERINE PROTEASE: CHARACTERIZATION AND BIOTECHNOLOGICAL APPLICATION

  • Leader : LUCIANO APARECIDO MEIRELES GRILLO
  • MEMBRES DE LA BANQUE :
  • FRANCIS SOARES GOMES
  • HUGO JUAREZ VIEIRA PEREIRA
  • JOAO XAVIER DE ARAUJO JUNIOR
  • JOHNNATAN DUARTE DE FREITAS
  • LUCIANO APARECIDO MEIRELES GRILLO
  • TICIANO GOMES DO NASCIMENTO
  • Data: 24 avr. 2024


  • Afficher le Résumé
  • The application of enzymes in biotechnological processes allows for a significant reduction in costs with a consequent reduction in energy consumption. In this context, proteases are the most produced biomolecules and represent 60% of all enzymes sold in the world. The importance of using these molecules is due to factors such as high catalytic activity, selectivity, specificity, as well as production variability. Given the demand to produce studies aimed at obtaining enzymes with an industrial bias, the aim of this work is to obtain a protease of biotechnological interest from the seeds of Leucaena leucocephala, following its characterization and application. The project's starting point was to investigate the enzymatic activity in the crude extract of L. leucocephala seeds. Through this research, it was possible to describe a new milk coagulant. The optimal enzyme activities were determined at 40ºC and pH 9.0. In stability tests, the enzyme remained stable over a wide range of pH (5.0 to 9.0) and temperatures (40ºC to 60ºC). Furthermore, the enzyme's catalytic activity improved in the presence of metal ions (Na+, K+, Mn2+, Mg2+ and Ca2+). The enzyme has demonstrated stability and compatibility with detergents, reducing agents and organic solvents. This highlights the biotechnological potential of this enzyme in various industrial processes. When the enzyme extract was subjected to different chromogenic substrates conjugated with p-nitroaniline, the hydrolysis showed specificity for BApNA. Furthermore, the enzyme was inhibited by PMSF (95.80%) followed by Benzamidine (84.22%). Therefore, the enzyme belongs to the serine protease class, an endopeptidase that preserves the presence of the amino acids serine, histidine and aspartic acid in its catalytic site. The aqueous extract of L. leucocephala seeds was subjected to toxicity testing using a bioindicator. It was possible to demonstrate that no toxic environment was generated after 24 hours of exposure of the crustaceans, Artemia salina, to different concentrations of the aqueous extract.

     

     
4
  • ANTONIO THOMÁS DA SILVA
  • Obtaining and Characterizing Coagulants from Milk Using Isolated Colonies of Enterococcus faecalis and Klebsiella variicola from the Intestine of the Adult Insect Rhynchophorus palmarum

  • Leader : LUCIANO APARECIDO MEIRELES GRILLO
  • MEMBRES DE LA BANQUE :
  • FRANCIS SOARES GOMES
  • HUGO JUAREZ VIEIRA PEREIRA
  • Jorge Luiz da Cunha Moraes
  • LUCIANO APARECIDO MEIRELES GRILLO
  • TICIANO GOMES DO NASCIMENTO
  • Data: 25 avr. 2024


  • Afficher le Résumé
  • The food industry is one of the pillars of the Brazilian economy, with dairy products standing out as the third most relevant sector. In this context, enzymes play a crucial role in dairy production, especially in the coagulation of milk to make cheese. The search for alternatives to enzymes of animal origin has driven research into coagulants of microbial origin, highlighting the importance of studying these microorganisms for the production of enzymes of biotechnological interest in the food industry. In this sense, the present study isolated colonies of Enterococcus faecalis and Klebsiella variicola taken from the intestine of the adult insect Rhynchophorus palmarum to obtain milk coagulants. Enzymatic extracts of bacterial colonies were prepared in 50mM Tris-HCl buffer, pH 8.0, and pH, temperature, inhibition, effects of different substrates, electrophoresis, zymography and coagulation of skimmed milk powder were carried out. K. variicola and E. faecalis present differences in their biochemical parameters, with distinct activities and characteristics. While K.variicola shows activity in AZOCASEINE and requires an optimum pH of 8 and an optimum temperature of 50ºC, E. faecalis exhibits activity in AZOCASEINE and SAAPFpNA, with an optimum pH between 7, 8 and 9, and an optimum temperature of 50ºC. Regarding inhibitors, K. variicola is inhibited by EDTA and DTT, while E. faecalis is inhibited by PMSF. Both enzymes have an optimum temperature of 50ºC for coagulant activity, but they differ in the minimum protein concentration (0.5 µg for K. variicola and 10 µg for E. faecalis) and in the minimum calcium concentration (2mM for K. variicola and 8mM for E. faecalis) for coagulant activity. Therefore, the study concludes that it is possible to obtain milk coagulant from microorganisms from the microbiota of the adult insect R. palmarum, highlighting the viability of these alternative sources of coagulants in the dairy industry.


2023
Thèses
1
  • JÚLIO RICARDO MACEDO SILVA
  • BIOPROSPECÇÃO DE LEVEDURAS PRODUTORAS DE BIOSSURFACTANTES ISOLADAS DE SEDIMENTOS DE MANGUEZAIS DA APA COSTA DOS CORAIS, ALAGOAS, BRASIL

  • Leader : MELISSA FONTES LANDELL
  • MEMBRES DE LA BANQUE :
  • MELISSA FONTES LANDELL
  • FRANCIS SOARES GOMES
  • HUGO JUAREZ VIEIRA PEREIRA
  • FATIMA MENEZES BENTO
  • Data: 24 févr. 2023


  • Afficher le Résumé
  • Ecossistemas de alta diversidade como os manguezais são promissores à bioprospecção de moléculas de interesse biotecnológico. Biossurfactantes são moléculas tensoativas, com baixa toxicidade, capaz de reduzir a tensão superficial, podendo tolerar diferentes temperatura, salinidade ou pH. Entretanto, a bioprospecção de leveduras em manguezais para a obtenção de biossurfactantes ainda é incipiente no Brasil. Nesse estudo, leveduras de sedimentos de manguezais do litoral de Alagoas (rios Santo Antônio e Tatuamunha) foram avaliadas quanto ao potencial de produção de biossurfactantes/bioemulsificantes. Nesse sentido, as leveduras foram submetidas a triagem na literatura para a identificação de espécies ainda não descritas para a produção de biossurfactante. Em seguida, 39 isolados de espécies não reportadas foram submetidas ao teste de emulsão IE24%, onde 6 linhagens de P. pseudolambica com os maiores IE24% foram selecionadas. A avaliação consistiu na determinação da tensão superficial, teste Parafilm® M, ensaio de deslocamento de óleo e colapso da gota. Foi analisado o IE24% a partir de cultivos de P. pseudolambica em caldo YEPD com óleo de soja. Também foram avaliados os efeitos de diferentes faixas de temperaturas, salinidades e pH sob os biossurfactantes/emulsificantes, assim como a capacidade de emulsificação em diferentes hidrocarbonetos. Além disso, avaliou-se a produção de lipases, e, posteriormente, foram caracterizados os grupos funcionais de amostras da biomassa celular, via Espectroscopia vibracional de infravermelho médio com transformada de Fourier (FTIR). As linhagens de P. pseudolambica demonstraram capacidade de reduzir a tensão superficial da água entre 36.69 mN/m a 42.47 mN/m, tolerância a condições de pH ácidos, emulsões variando entre 51% e 63%, e resistência a altas temperaturas (90, 100, 110, 120 e 150 ºC). Os cultivos celulares apresentaram capacidade de emulsionar diferentes hidrocarbonetos e atividade de lipase. A análise espectroscópica (FTIR) das amostras de biomassa celular revelou a existência de diversos grupos funcionais típicos de uma estrutura complexa de natureza de carboidrato e lipídio. Portanto, essas descobertas inéditas contribuem à compreensão do potencial de produção de biossurfactantes/bioemulsificantes e lipases de P. pseudolambica oriunda de manguezais da região Nordeste do Brasil, ainda não relatado na literatura, revelando uma eventual possibilidade de uso biotecnológico a ser melhor explorado.

2022
Thèses
1
  • RODGER MARCEL LIMA ROCHA
  • PERINEURAL INVASION IN EPIDERMOID CARCINOMA OF THE HEAD AND NECK: IMPACT OF GENES RELATED TO CIRCADIAN RHYTHM
  • Leader : CARLOS ALBERTO DE CARVALHO FRAGA
  • MEMBRES DE LA BANQUE :
  • AMANDA KARINE BARROS FERREIRA RODRIGUES
  • CARLOS ALBERTO DE CARVALHO FRAGA
  • CAROLINNE DE SALES MARQUES
  • JUSSARA ALMEIDA DE OLIVEIRA BAGGIO
  • Data: 28 mars 2022


  • Afficher le Résumé
  • During the processes of tumor formation and progression there is the involvement of the action of cells

    that create a favorable microenvironment for cancer development. Among the mechanisms involved in

    these events are circadian rhythm alterations and perineural invasion. Both events have been described,

    separately, as active in tumor aggressiveness. It is important to identify events related to circadian

    rhythm alterations that are associated with cancer that may directly impact the invasion of this tissue

    into the peripheral nervous system. The aim of this study was to evaluate perineural invasion in head

    and neck cancer, associating it with genes related to the peripheral nervous system and circadian rhythm.

    The data showed that the circadian rhythm and axon guidance pathways were deregulated in head and

    neck squamous cell carcinoma with positive perineural invasion. Differential expression analyses identified

    that genes associated with Schwann cell response in injured nerves that are positively regulated

    activate the circadian rhythm pathway. Negative correlation was identified between expression and

    methylation of PER3 and RORC genes when analyzed separately in both tumor groups. Positive correlations

    between expression of PER2 and RORC, as well as of RORC with MPZ, S100A8 and NUF2

    genes were identified only in the groups of patients who did not present perineural invasion. Circadian

    rhythm genes are dysregulated in neoplastic tissues, with increased expression of oncogenes and decreased

    expression of tumor suppressors. Increased expression of mTOR protein was identified in patients

    presenting with perineural invasion. The data suggest that dedifferentiation and proliferation of

    Schwann cells may be associated with downregulation of circadian rhythm genes; consequently,

    Schwann cells produce different factors that participate in various processes of tumor progression and

    invasion of adjacent tissues, including activation of the mTOR pathway. These processes may also be

    involved in tumor invasion into the perineural tissue in head and neck cancer.

2
  • JULIA DE ANDRADE BRANDÃO
  • In vitro evaluation of biomechanical, biochemical and molecular alterations of human fibroblast-like synoviocytes (HFLS) infected by Chikungunya virus 

  • Leader : ENIO JOSE BASSI
  • MEMBRES DE LA BANQUE :
  • ABELARDO SILVA JUNIOR
  • CAROLINNE DE SALES MARQUES
  • ENIO JOSE BASSI
  • Data: 30 sept. 2022


  • Afficher le Résumé
  • Chikungunya virus (CHIKV) is an arbovirus transmitted by Aedes sp. mosquitoes that causes Chikungunya fever (CHIKF) and could be progress to Rheumatic Chronic Syndrome (RSC). The synovial joints are affected during this infection, and fibroblast- like synoviocytes (FLS) are the major cell type in the composition of synovial tissue. FLS in pathologies such as rheumatoid arthritis (RA), assumes an aggressive profile, causing severe tissue damage in the inflammatory process. This damage can occur due to changes in cellular biomechanical properties. Thus, the aim of this work was to understand biomechanical, biochemical and molecular changes in human fibroblast-like synoviocytes (HFLS) after CHIKV infection in vitro. Determination of the MOI was performed by MTT assay and viral infection was confirmed by flow cytometry, RT-PCR and infection of Vero E6 cells with HFLS supernatant. The following were evaluated: morphological changes and Young`s modulus by atomic force microscopy (AFM); cytoskeleton changes by fluorescence analysis of F-actin labeling; biochemical changes were determined by Raman spectroscopy; relative gene expression analysis by RT-qPCR. Also, the quantification of chemokines was measured in the supernatant using the CBA methodology. As result, HFLS were infected in vitro since 46.8% of the cells were CHIKV-positive after 48h of infection in the intracellular flow cytometry analysis. In addition, viral RNA in the cell supernatant was detected by RT-PCR. The detection of plaque-forming units (PFUs) in the monolayer of infected Vero E6 cells indicated the presence of viable viral particles in the HFLS supernatant. AFM analysis shows significant changes in cell morphology and nanoindentation analysis detected a 107.46% increase in Young's elastic modulus, suggesting alterations in the cytoskeleton. Fluorescence cytoskeleton staining indicated disruption of F-actin filaments after 12h of infection. Raman spectroscopy and PCA analysis show a total variance of 65% between uninfected and CHIKV-infected HFLS. In addition, the major alterations detected were related to nucleotides, amide I, amide III, β-sheets, lipids and collagen, with signatures in 795, 977, 1031, 1223, 1290, 1444, 1495, 1635, 1660 and 1709 cm-1. Relative gene expression shows an increase in the expression of MMP1VEGFA and UGDH. Also, an increase in the IP-10 and a reduction in MCP-1 chemokine levels were detected in the supernatant 48 after viral infection. In summary, the results presented in this work help elucidate the cellular and molecular changes involved in the CHIKV-HFLS interaction, thus contributing to developing new therapeutic strategies for this arbovirus.

3
  • ANA KELLY DA SILVA FERNANDES DUARTE
  • Transcriptomic analysis of chronobiological markers and Schwann cells associated with melanoma progression

  • Leader : CARLOS ALBERTO DE CARVALHO FRAGA
  • MEMBRES DE LA BANQUE :
  • CARLOS ALBERTO DE CARVALHO FRAGA
  • HENRY DAVID MOGOLLÓN GARCÍA
  • LEONARDO BROETTO
  • Data: 7 déc. 2022


  • Afficher le Résumé
  • Melanoma is considered one of the most aggressive neoplastic types because it presents a rapid progression to metastasis, although several environmental and genetic factors have already been described that may influence the development and aggravate this tumor type, the deregulation in the circadian timing system remaining unattractive. Melatonin is the main hormone controlling the genes of the biological clock, it is known that an eventual change in the regulation of these genes can contribute to the development of several diseases including cancer. In this study, bioinformatics analyzes were performed with tissue data from melanoma and non-melanoma skin cancer in order to assess which genes related to the biological clock may contribute to the progression of this tumor type. In addition, cell culture assays were carried out using melatonin as a treatment in non-melanoma cutaneous carcinoma cell lines (A431) and melanoma-type (B16) observing changes in these neoplastic cells. Changes in gene expression associated with clock, anticipation, migration, invasion and cell apoptosis genes in A432 and B16 cells after melatonin treatment were evaluated. In summary, genes related to the biological clock showed altered expression in melanoma skin cancer and these genes were associated with poor survival, according to the bioinformatics analysis. In cell culture, melatonin administration increased the expression of the PER2, CRY1 and CRY2 genes and experienced CLOCK gene expression levels. The PER2, CRY1 and CRY2 genes are considered tumor suppressor genes that can control events of importance in the tumor context, such as cell anticipation, apoptosis and control of the DNA repair and damage system. Melatonin administration has been shown to be able to induce behavioral changes in melanoma cells and influence the expression of genes MKI67, HIF-1A, VEGFA, COL1A1, CDH1, CASP3, BAX, BCL2, MMP9, PER2, CRY1, CRY2 AND CLOCK. The main cause of mortality from melanoma is metastatic dissemination and subsequent complications, despite advances in surgery and other methods of treatment, the survival rate of a patient with metastatic melanoma remains unchanged, only 4 years, in view of the data reported here, it is expected to contribute to therapeutic research by guiding the treatment of individuals who have this condition.

Thèses
1
  • RICARDO BEZERRA COSTA
  • PURIFICATION, CHARACTERIZATION AND EVALUATION OF ANTITUMORAL, ANTIMICROBIAL ACTIVITIES AND ON HEMOSTATIC PARAMETERS OF LECTINS FROM Genipa americana L. (JENIPAPO), Rhizophora mangle L. (RED MANGROVE) AND RED PROPOLIS FROM ALAGOAS

  • Leader : FRANCIS SOARES GOMES
  • MEMBRES DE LA BANQUE :
  • EDMA CARVALHO DE MIRANDA
  • FRANCIS SOARES GOMES
  • LEONARDO BROETTO
  • LUCIANO APARECIDO MEIRELES GRILLO
  • SONIA SALGUEIRO MACHADO
  • Data: 21 oct. 2022


  • Afficher le Résumé
  • The use of macromolecules obtained from plant tissues has great economic and pharmacological potential and this is due to the presence of bioactive compounds. Among these, lectins have been intensely explored due to the various biotechnological actions they may have, especially the antifungal, anticoagulant and antitumor activities. Thus, the present work aimed to purify, characterize and evaluate the antitumor, antimicrobial and hemostatic activity of lectins from Genipa americana L. (jenipapo), Rhizophora mangle L. (red mangrove) and red propolis from Alagoas. Lectins were isolated initially by extraction in 50mM Tris-Hcl pH 8.0 for G. americana seeds and bark, 0.15M NaCl for R. mangle seeds and 0.15M NaCl with 30% ethanol for red propolis. Then, salt fractions were made with ammonium sulfate and the fractions that showed better activity were submitted to molecular exclusion chromatography (Sephacryl S-100), for isolation of lectins from G. americana (GaBL); molecular exclusion chromatography (Sephacryl S-100) followed by a cation exchanger (DEAE Sepharose) for the lectin from G. americana seeds (GaSL); or chitin column chromatography to isolate lectins from R. mangle and red propolis. Through a single chromatographic step a lectin (GaBL) was isolated and by SDS-PAGE (10%) it was observed that GaBL has an approximate molecular mass of 242.5 kDa. The effect of lectin on blood clotting was evaluated through activated partial thromboplastin time (APTT), prothrombin time (PT). GaBL showed anticoagulant activity only in the intrinsic pathway, where the APTT was prolonged.

    In the cytotoxic test, GaBL was not toxic to 3T3 fibroblast cell lines at concentrations below 50μg/mL. The antitumor activity evaluated used human skin cancer (A431), melanoma (B16) and tongue squamous cell carcinoma (SCC9) cell lines. Cell proliferation and cell migration were decreased in all cell lines evaluated in contact with 10 µg/ml of GaBL decreased invasion of SCC9 cells. Apoptosis was higher in lectin treated B16 and SCC9 cells. GaBL's positive regulation of E-cadherin and suppression of Col1A1 in all strains tested indicated less cancer development. The lectin from G. americana seeds, GaSL, had its hemagglutinating activity (AH) strongly inhibited by rhamnose, but was not affected by divalent ions or EDTA.  GaSL is classified as a thermostable lectin, with best activity at a temperature below 80°C and in the pH range 5.0 to 6.0. In the face of antifungal activity, GaSL, when tested with the fungi Candida albicans, Staphylococcus aureus and Cryptococcus neoformans, was shown to inhibit all fungal strains at concentrations below 12.5 μg/mL. The lectin from R. mangle seeds is also thermostable, but unlike the others, it was inhibited more strongly by arabinose and casein, had better activity at pH 8.0 and 9.0 and had its AH reduced in the presence of Mn2+, Mg2+ and Ca2+ ions, not altered by EDTA and stimulated in the presence of Zn2+. The lectin from propolis was also strongly inhibited by casein, is thermostable, showed better AH in the pH 5.0 to 6.0 range and was reduced in the presence of Mn2+, Mg2+, slightly stimulated by Zn2+ and not affected by EDTA and Ca2+. In view of the antifungal activity PVAL proved to be a promising biotechnological tool, when tested with the fungi Candida albicans, Staphylococcus aureus and Cryptococcus neoformans. PVAL at concentrations of 12.5 μg/mL was able to strongly inhibit Candida albicans and Staphylococcus aureus and 25 μg/mL Cryptococcus neoformans. The effect of PVAL on blood clotting was evaluated through activated partial thromboplastin time (APTT), prothrombin time (PT). Where PVLA promoted expressive prolongation of APTT, while for TP it promoted strong inhibition. In view of the above data, we can highlight that GaBL has high antitumor potential against cancer of the upper aerodigestive tract and has a notorious homeostatic activity. GaSL and PVAL have remarkable antifungal activity and can be a promising biotechnological tool, the latter having an important role in the homeostatic processes of coagulation, being a strong protractor of APTT and TP inhibitor. Finally, we emphasize that all the lectins studied have structural characteristics that favor the biotechnological study involving human health.

2
  • DÁVIDA MARIA RIBEIRO CARDOSO DOS SANTOS
  • Production, isolation, characterization and biotechnological application of endoglucanase from the filamentous fungus Pycnosporus sanguineus

  • Leader : HUGO JUAREZ VIEIRA PEREIRA
  • MEMBRES DE LA BANQUE :
  • FRANCIS SOARES GOMES
  • HUGO JUAREZ VIEIRA PEREIRA
  • LUCIANO APARECIDO MEIRELES GRILLO
  • RUTH RUFINO DO NASCIMENTO
  • SONIA SALGUEIRO MACHADO
  • Data: 12 déc. 2022


  • Afficher le Résumé
  • The growth of the world population increased investment in agribusiness and,

    consequently, increased the generation of agroindustrial residues, mostly

    lignocellulosic. Clean alternatives for the use of agro-industrial residues have been

    researched around the world, among them is the use of residues as a source for

    fungal growth for the production of enzymes of biotechnological interest. The

    objectives of this work were to produce, isolate, characterize and biotechnologically

    apply the endoglucanase produced from the filamentous fungus Pycnoporus

    sanguineus. Five different agro-industrial residues (wheat bran, sugarcane bagasse,

    wood powder, coconut fiber and filter paper) were used by solid state fermentation

    (FES). The enzyme was isolated through ethanol fractionation and ion exchange

    chromatography, the isolation was confirmed by (SDS-PAGE) in reducing and

    denaturing conditions. The isolated endoglucanase was characterized for

    temperature, pH, halotolerance, enzymatic kinetics and applied biotechnologically

    through the saccharification of agro-industrial residues. Endoglucanase production

    was higher in wheat bran (72 hs). The 80-100% fraction of the ethanol fractionation

    concentrated greater enzymatic activity and was subjected to ion exchange

    chromatography (DEAE-Sepharose), the isolated enzyme was eluted in a single

    fraction, as confirmed by SDS-PAGE. The optimal temperature of the isolated

    endoglucanase was 50°C and the thermal stability was between 20° and 60°C with

    up to 50% of the enzymatic activity, temperatures compatible with other fungal

    endoglucanases. The optimum pH was pH 5.0, with stability at pH between pH 4.5

    and 8.0, demonstrating stability at slightly alkaline pH compatible with

    biotechnological applications in the detergent industry. The isolated enzyme

    remained viable with activity greater than 100% in up to 5 M NaCl, an important

    characteristic because some industrial processes take place in the presence of large

    amounts of NaCl. The enzyme presented Km 3.18 ± 100 mg/mL and the Kcat equal

    to 4.53 S-1 and managed to produce 273 mg/mL reducing sugars in 24 hours in rice

    husks, proving to be viable for the production of second-generation ethanol . The

    present work concluded that the fungus P. sanguineus is a producer of an

    endoglucanase with important biochemical characteristics, fast production and low

    cost.

2021
Thèses
1
  • SIBELLE LEITE ALDEMAN DE OLIVEIRA
  • Prospecting for secondary metabolites produced by marine fungi with antifungal activity

  • Leader : MELISSA FONTES LANDELL
  • MEMBRES DE LA BANQUE :
  • FRANCIS SOARES GOMES
  • JOAO XAVIER DE ARAUJO JUNIOR
  • LUCIANO APARECIDO MEIRELES GRILLO
  • MELISSA FONTES LANDELL
  • Data: 19 févr. 2021


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  • The marine environment has become promising in the search for chemical substances with biotechnological, pharmaceutical and agricultural potential. These complex substances are often produced by microorganisms associated with marine invertebrates (corals and sponges), especially filamentous fungi. This group of microorganisms has shown potential because they have peculiar biochemical routes capable of synthesizing characteristic or species-specific metabolites. These natural products provide antifungal, antimicrobial, antioxidant, anti-inflammatory, antiviral properties, among others. Therefore, the objective of this work was to make a systematic review on marine fungi and secondary metabolites with biological activities and to investigate the biotechnological potential of filamentous fungi associated with marine invertebrates in Maceió / AL with antifungal activity against infectious agents. The systematic review was carried out by searching for keywords such as “marine fungi”, “antifungal”, “secondary metabolite” and “natural products” in the Pubmed and Science Direct databases, obtaining 19 articles published between the years 2015 and 2020 that describe 84 metabolites produced by marine fungi. The biotechnological potential was verified from the production of crude extracts from 16 fungi, collected in the coral reef of Praia de Ponta Verde, Maceió-AL. To obtain the fungal extracts, they were grown. After cultivation of 7 days in Potato Dextrose Agar (BDA), followed by a second cultivation of 14 days in liquid medium composed of 1% glucose, 0.1% yeast extract, 0.1% potassium chloride, sodium chloride 0.1%, the fungi supernatant and mycelium were extracted with ethyl acetate, generating an organic and aqueous fraction. Subsequently, they were analyzed using the Minimum Inhibitory Concentration Determination (MIC) technique to analyze the sensitivity of microorganisms to antimicrobials. Crude extracts from ten marine fungi showed antifungal activity against the yeast Candida haemulonii, five against Candida albicans, two against Cryptococcus gatti and 10 against Cryptococcus neoformans. Two of the extracts of the active fungi were fractionated with methanol, acetonitrile and water and tested again by the CIM method. The fungi C. neoformans ATCC 40283 and C. albicans ATCC 90028 were inhibited by all tested fractions, presenting MIC between 0.5-2.0 µ/mL, demonstrating that the bioactive compounds derived from marine microorganisms have antimicrobial and biotechnological potential.

2020
Thèses
1
  • LILIANE PATRICIA GONÇALVES TENÓRIO
  • AVALIAÇÃO DO POTENCIAL EFEITO DA MELATONINA EM MODELO IN VITRO DE CARCINOMA DE CÉLULAS ESCAMOSA ORAL E IDENTIFICAÇÃO DE MARCADORES MOLECULARES ASSOCIADOS ÀS CÉLULAS DE SCHWANN

  • Leader : CARLOS ALBERTO DE CARVALHO FRAGA
  • MEMBRES DE LA BANQUE :
  • AMANDA KARINE BARROS FERREIRA RODRIGUES
  • CARLOS ALBERTO DE CARVALHO FRAGA
  • CAROLINNE DE SALES MARQUES
  • LIVIA ANDRESSA SILVA DO CARMO
  • Data: 4 févr. 2020


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  • O Carcinoma de células escamosa oral (CCEO) é uma doença comumente relacionada com alterações genéticas, epigenéticas e a fatores de risco, como o tabagismo crônico e alcoolismo, sendo responsável por mais de 90% de todas as neoplasias malignas orais. A relevância deste estudo fundamenta-se na identificação do papel do ritmo circadiano e da sinalização da melatonina e sua regulação como um potencial marcador no carcinoma epidermoide de boca. Ainda, analisamos, através das ferramentas de bioinformática, a associação do CCEO e as células de Schwann. Para o estudo in vitro, foram cultivadas, em cultura, uma linhagem de células imortalizadas uma de carcinoma epidermoide de boca (SCC- 9). As células foram separadamente tratadas com diferentes concentrações de melatonina, afim de identificar a concentração ideal. As análises de viabilidade celular foram realizadas através do teste do 3-(4,5- dimetiltiazol-2yl)-2,5-difenil brometo de tetrazolina (MTT). As células foram submetidas à estufa 37°C por 3 tempos distintos, a saber: 24 horas, 48 horas e 72 horas. O comportamento fenotípico das células, sob tratamento, foi avaliado por meio dos ensaios de proliferação, migração e apoptose. Todos os dados coletados foram digitalizados em um programa de estatística SPSS®, versão 21.0, para Windows. Os testes estatísticos foram selecionados de acordo com as características das amostras e a distribuição das variáveis. O nível de significância foi fixado em 5% (p<0,05). Os experimentos e análises foram realizados na Universidade Federal de Alagoas/Campus Arapiraca. Os resultados demonstraram que a melatonina inibiu a proliferação celular, bem como a migração das células neoplásicas da linhagem SCC-9. Para análise bioinformática foram utilizadas diferentes ferramentas para avaliar a expressão diferenciadas de genes associadas com a invasão perineural e o CCEO. Inicialmente foram obtidos dados de amostras de CCEO com e sem invasão perineural. A expressão dos genes dessas amostras foi comparada com o tecido normal, para a identificação dos genes aumentados e diminuídos. Posteriormente, esses dados foram contrastados com dados da expressão das células de Schwann previamente publicados pelo nosso grupo. Os genes com a expressão diminuída nas amostras de tecido neoplásico com invasão perineural estão associados a via “guia axonal”. Esse dado é de extrema relevância, uma vez que a diminuição da expressão desses genes podem ser alvos-chave no tratamento e prognostico do câncer de boca.

2
  • STELLA FREITAS DE QUEIROZ
  • IDENTIFICAÇÃO, ISOLAMENTO E CARACTERIZAÇÃO PARCIAL DA LECTINA DE ENTRECASCAS DE Abarema cochliacarpos (GOMES) BARNEBY & GRIMES

    IDENTIFICAÇÃO, ISOLAMENTO E CARACTERIZAÇÃO PARCIAL DA LECTINA DE ENTRECASCAS DE Abarema cochliacarpos (GOMES) BARNEBY & GRIMES

     

  • Leader : FRANCIS SOARES GOMES
  • MEMBRES DE LA BANQUE :
  • EDMA CARVALHO DE MIRANDA
  • FRANCIS SOARES GOMES
  • JOSE MARIA RODRIGUES DA LUZ
  • Data: 17 mars 2020


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  • Diversas plantas são utilizadas pelo homem para o uso terapêutico e propagadas ao longo das gerações. Atualmente há um crescimento em pesquisas buscando identificar e isolar substâncias ativas presentes nesses organismos visando a criação de novos fármacos. A produção dos princípios ativos desses organismos está relacionada ao seu mecanismo de defesa contra agentes externos. Essas substâncias são normalmente classificadas em metabólitos primários e secundários. As lectinas são proteínas do metabolismo primário que podem assumir diversos papéis biológicos, incluindo atividades antibacteriana, antifúngica, anti-inflamatória, antitumoral e cicatrizante. Essas atividades estão relacionadas à capacidade que as lectinas têm de se ligarem a carboidratos presentes na superfície celular de organismos alvos, impedindo o seu desenvolvimento e/ou induzindo uma resposta celular. Abarema cochliacarpos (Gomes) Barneby & Grimes, popularmente conhecida como barbatimão, é uma planta utilizada na medicina popular para tratar úlceras, feridas, infecções na pele, gastrite, dentre outras. Este estudo tem como objetivo investigar a presença de lectina em entrecascas de A. cochliacarpos e realizar a purificação e caracterização parciais da mesma. O extrato foi preparado e filtrado em carvão ativado na tentativa de remover compostos que não são de interesse. Uma alíquota desse filtrado foi aplicada em uma coluna cromatográfica de quitina e as proteínas de interesse foram eluídas com ácido acético 1 M. Em seguida, a amostra foi dialisada para remover a solução de eluição e sua atividade hemaglutinante foi avaliada (512). A partir daí denominou-se por AcBL (lectina de entrecascas de A. cochliacarpos). Não foi possível confirmar a purificação da lectina através de eletroforese SDS-PAGE em condições redutoras e não redutoras; o gel mostrou a presença de duas bandas proteicas nas duas condições. A dosagem de proteínas e de fenóis foi feita em todas as etapas da purificação, bem como foram realizados os testes de caracterização. AcBL foi inibida por caseína, apresentou termoestabilidade em ampla faixa de temperatura, demonstrou ser uma proteína com caráter ácido-neutro e teve sua atividade reduzida na presença de EDTA, íons cálcio e magnésio. O desenvolvimento deste trabalho contribui para o isolamento de novas proteínas, apresentando relevância regional ao investigar lectinas de uma planta medicinal do Nordeste brasileiro, podendo representar um novo biomaterial com elevado potencial biotecnológico.

2019
Thèses
1
  • GENILDA CASTRO DE OMENA NETA
  • ANÁLISE TRANSCRIPTÔMICA DE GENES DO SISTEMA IMUNE EM DIFERENTES SUBTIPOS DE CÂNCER DE MAMA

  • Leader : CARLOS ALBERTO DE CARVALHO FRAGA
  • MEMBRES DE LA BANQUE :
  • CARLOS ALBERTO DE CARVALHO FRAGA
  • CAROLINNE DE SALES MARQUES
  • LIVIA ANDRESSA SILVA DO CARMO
  • Data: 11 déc. 2019


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  • O Câncer de Mama (CM) é o tipo de câncer com maior incidência nas mulheres no Mundo. Ele apresenta três subtipos moleculares (Luminal A, Luminal B, HER2 e Triplo Negativo/Basal) e cada um deles têm prognósticos diferente e necessidade de intervenções que sejam eficientes no tratamento, consequentemente, aumentem a sobrevida dos pacientes. É possível estudar os subtipos clínicos para elucidar a diversidade fenotípica das células imunes no microambiente tumoral. Nesse sentido, a Bioinformática Translacional (BT) atua trazendo conhecimento biológico que pode ser aplicado na clínica a partir de dados genômicos, proteômicos, histológicos e clínicos de pacientes com CM. O objetivo deste trabalho é caracterizar o perfil imunológico nos subtipos moleculares de câncer de mama. A metodologia utilizada envolveu diversas ferramentas computacionais que envolveu a coleta dos dados em bancos de dados (Atlas Genômico do Câncer -TCGA, Entrez Gene do NCBI, GeneCards, Atlas Proteômico do Câncer -TCPA, Atlas de Proteínas Humanas, DAVID) e análises (diagrama de Venn, Enciclopédia de Genes e Genomas -KEGG, TCGAbiolinks, Recurso de Estimativa de Células Imunes do Tumor - TIMER, Predição de Dados Clínicos de Perfis Genômicos - PRECOG). Dentre as análises estatísticas foi utilizado o Software GraphPad Prism e o teste Two-Way ANOVA bidirecional e o teste t bicaudal não pareado. Através das análises das células imunes, genes e proteínas expressas no tecido tumoral de cada subtipo foi possível determinar qual o tipo de resposta imune. Nesse estudo, os genes superexpressos apresentam um forte indício de resposta Th1 para o subtipo basal, enquanto o Her2, luminal A e luminal B tem uma resposta Th2. Foi montado um mapa global de associações prognósticas para 22 populações imunes através da malignidade do CM. Comparando os marcadores dos fenótipos dos neutrófilos N1 e N2 foi encontrado cinco genes superexpressos de neutrófilos N2 no basal, um gene em Her2, Serpina 1 no luminal A e Cdk5r1 no luminal B. A regulação positiva dos genes Nos2 e a regulação negativa dos genes Serpina 1 foram associados a câncer de mama de baixa sobrevida. Com base na análise das células imunes e na expressão gênica de uma lista de neuropeptídeos/receptores, foi identificado um aumento de macrófago M1/M2 nos diferentes subtipos de câncer de mama, bem como a ativação via interação ligante-receptor neuroativo, respectivamente. No subtipo basal foi constatado a superexpressão de 33 neuropepetídeos e 31 receptores no tecido do câncer. Já no subtipo luminal apresentou 24 neuropepídeos e 21 receptores superexpressos. Com a análise da sobrevida foi observado que os genes superexpressos Npr3, Prok1, Serpina 11 e Pyy tiveram impacto na sobrevida. Portanto, a análises dos genes superexpressos demonstram que a reposta Th1 está relacionado com o subtipo de câncer basal e, HER2, luminal A e luminal B, à Th2. Também foi constatado que o subtipo basal apresenta no infiltrado do tecido tumoral, macrófagos M1 e neutrófilos N2 comparado com os outros subtipos e, há indícios que essa diferença está associada com a expressão gênica de neuropetídeos e receptores. Os genes superexpressos dos neuropeptídeos e receptores avaliados tiveram impacto na sobrevida dos paciente.

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